You seem to be accessing the Mage versions of the spells. You should go to the top and use the drop town to select ~Clerical (or ~Clerical - [College Name]) and it will then be filtered to only clerical spells.
If you are using Dungeon Fantasy data files it become a nightmare since there are now dozens of ~Domain and ~Domain - College lines. The stupid tilde causes problems while trying to just type in the domain or college. =/
Anyways, if the spell is not listed under clerical or the proper domain/college or whatever then you actually have to edit the spells.
- Add the spell, but hit cancel. The spell should have a red "P" by it and the prerequisites have not been added.
- Hit the edit button.
- Open the full edit window.
- cat - change all references of domain to what you want.
- needs - repeat above
- description - repeat above.
At least that is what I am having to do to make a customized spell list for my Cat-Folk cleric. Although I am strongly considering just making a custom data file to save time.